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API
atlas.pp.preprocessing
atlas.tl.PalantirExtension
atlas.tl.CellRankExtension
atlas.tl.pearson_correlation
atlas.tl.spearman_correlation
atlas.tl.fate_concentration_index
atlas.tl.terminal_pseudotime_enrichment
atlas.tl.terminal_state_silhouette
atlas.pl.plot_tree
atlas.pl.plot_trends
atlas.pl.plot_fate_probabilities
atlas.pl.plot_embedding
Changelog
Contributing guide
References
Tutorial 1: Getting Started With ATLAS
Tutorial 2: Trajectory Inference using Palantir
Tutorial3: Trajectory Inference using CellRank Pseudotime Kernel
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